PDFAMS: Homology Modeling Tools

PDFAMS software family is a collection of homology modeling tools, which are efficacious algorithm of predicting tertiary structures of proteins. PDFAMS is based on an academic software, FAMS (Full Automatic Modeling System), which is developed in the laboratory of Professor Hideaki Umeyama in School of Pharmaceutical Sciences, Kitasato University.

Features

• High accuracy modeling
  PDFAMS software family employs the same algorithm of FAMS, which won the first prize among the ordinary servers in the international competition of protein modeling, CAFASP3 (2002).

• Fully automated modeling from amino-acid sequences
  PDFAMS software family offers you the easiest and shortest way to obtain 3D structures of proteins, which used to be available only to highly skilled modeling engineers. All you need is amino-acid sequences.

• Assorted functions
  In addition to the modeling module of isolated proteins, PDFAMS software family contains also the modules that predict the protein structures which are combined the specified ligand, and which are composed of difference domains, and more.

Products

• PDFAMS Pro
  The basic module of the fully automated modeling of protein structures from given amino-acid sequences.

Option

• PDFAMS Complex
  Optional module to consistently predict the structure of the proteins that are composed of several different subunits.

• PDFAMS Ligand
  Optional module to consistently predict the structure of the proteins that are combined with ligands.

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